root/branches/newmole

Revision Log Mode:


Legend:

Added
Modified
Copied or renamed
Rev Chgset Date Author Log Message
(edit) @2449 [2449] 3 weeks rjrw Merged from trunk r2439:2448
(edit) @2442 [2442] 4 weeks rjrw Apply get_ptr shim through rest of mole_*.cpp coding
(edit) @2441 [2441] 4 weeks rjrw Remove get_const_address -- switch throughout mole_solve.cpp to the more …
(edit) @2440 [2440] 4 weeks rjrw Merged from trunk r2405:2439.
(edit) @2430 [2430] 5 weeks rjrw Fix get_const_address template -- is now inline, argument is a reference, …
(edit) @2426 [2426] 5 weeks rjrw Fix for limit_lte_he1_ste.in -- increase size of initial guess on rlimit …
(edit) @2420 [2420] 6 weeks rjrw ExtractMethod? on calculation of element densities in …
(edit) @2419 [2419] 6 weeks rjrw Clean up diagnostic printout
(edit) @2418 [2418] 6 weeks rjrw Switch lgConserve to false for consistency with rlimit treatment …
(edit) @2407 [2407] 6 weeks rporter branches/newmole - this data change left out of an earlier commit that …
(edit) @2406 [2406] 6 weeks rporter branches/newmole - bring in r3275:2405
(edit) @2376 [2376] 2 months rjrw Merged from trunk r2345:2375
(edit) @2356 [2356] 3 months gary fix for pgcc bounds check
(edit) @2348 [2348] 3 months gary tsuite now fully merged with trunk
(edit) @2347 [2347] 3 months gary merge data to head of trunk to make easier to test of various systems
(edit) @2346 [2346] 3 months rjrw Merged from trunk r2137:2345
(edit) @2139 [2139] 5 months rjrw Merged from trunk r2124:2137
(edit) @2125 [2125] 5 months rjrw Merged from trunk r2111:2124
(edit) @2124 [2124] 5 months rjrw Revert Gary's change from r2097 -- no longer appears necessary
(edit) @2123 [2123] 5 months rjrw Further finesse the finite-(pseudo-)timestep treatment for …
(edit) @2118 [2118] 5 months rjrw Use internal timestep limiting (...in an attempt...) to improve robustness …
(edit) @2112 [2112] 6 months rjrw Merged from trunk r2088:2111
(edit) @2097 [2097] 6 months gary one additional line that changes starting temperature to 1e4K
(edit) @2096 [2096] 6 months gary add explicit casts to (realnum) to silence warnings in vs
(edit) @2094 [2094] 6 months rjrw Fix for problems in pdr_coolbb.in -- step control in …
(edit) @2090 [2090] 7 months rjrw Iso_level/ion_solver consistency fixes -- pdr_leiden_f1 now runs through.
(edit) @2089 [2089] 7 months rjrw Merged from trunk r2085:2088
(edit) @2086 [2086] 7 months rjrw Merged from trunk r2078:2085
(edit) @2080 [2080] 7 months rjrw Revert accidental removal of checking code and molecular sources in last …
(edit) @2079 [2079] 7 months rjrw Merged from trunk r2022:2078
(edit) @2078 [2078] 7 months rjrw Deal with FPE in grains_lte model
(edit) @2077 [2077] 7 months rjrw Attempt to deal with most VS warnings.
(edit) @2076 [2076] 7 months rjrw Attempt to fix problem with PGI/ICC builds.
(edit) @2069 [2069] 7 months rjrw More optional debugging code, Ensure we're using the exact Jacobian for …
(edit) @2068 [2068] 7 months rjrw Updated C,N,O,S doubly-ionized reactions from Nick Abel.
(edit) @2056 [2056] 7 months rjrw Move to overwriting common species with conservation constraints rather …
(edit) @2055 [2055] 7 months rjrw Move further towards Householder projection method for of …
(edit) @2054 [2054] 7 months rjrw Wrap comment in mole_solve Cubic backtrack in newton_step
(edit) @2050 [2050] 7 months rjrw Further tests on: the consistency of the Householder matrix with the …
(edit) @2044 [2044] 7 months rjrw Move towards using Householder reflections to apply species conservation …
(edit) @2043 [2043] 7 months rjrw Integrate Nick Abel's Ne, Ar additions to the chemistry.
(edit) @2042 [2042] 7 months rjrw Change molecule structure to class Make molecular column table easier to …
(edit) @2041 [2041] 7 months rjrw Implement Householder reflections, initial operators and tests. Catch one …
(edit) @2031 [2031] 7 months rjrw Stubs for using minpack routines (they don't improve things, possibly due …
(edit) @2028 [2028] 7 months rjrw Further refactor newton_step to more purely numerical function. Remove …
(edit) @2027 [2027] 7 months rjrw Add optional diagnostics for rate and chemical balance controlling species …
(edit) @2023 [2023] 7 months rjrw Merged from trunk r1941:2022
(edit) @1942 [1942] 8 months rjrw Merged from trunk r1917:1941
(edit) @1938 [1938] 8 months gary need to include algorithm to link on my platform
(edit) @1918 [1918] 8 months rjrw Merged from trunk r1833:1917
(edit) @1851 [1851] 9 months rjrw Deal with FPE in dense.cpp Use iteratively improved matrix solver in …
(edit) @1849 [1849] 9 months rjrw In most places, findrate is better than findrk as it has consistent units …
(edit) @1848 [1848] 9 months rjrw Tidy & correct H2 rate diagnostics
(edit) @1847 [1847] 9 months rjrw Eliminate unused TH85 default molecular solution (and a further …
(edit) @1846 [1846] 9 months rjrw Fix most VS warnings Fix bug in ordering of reactants (made obvious by VS …
(edit) @1839 [1839] 9 months rjrw Remove some more likely counterproductive tests on iteration.
(edit) @1838 [1838] 9 months rjrw Minor changes to resulting from trying to chase down differences …
(edit) @1836 [1836] 9 months rjrw Remove annoying NULL from output stream…
(edit) @1835 [1835] 9 months rjrw Move molecular source and sink copy to mole_effects routine. Increase …
(edit) @1834 [1834] 9 months rjrw Merged from trunk r1830:1833
(edit) @1830 [1830] 9 months rjrw Merged from trunk r1803:1829
(edit) @1805 [1805] 10 months rjrw Fix upper limit of molecular loop for consistency. Still appears to be …
(edit) @1804 [1804] 10 months rjrw Merge from trunk r1800:1803 Correct iso_level handling of molecular …
(edit) @1800 [1800] 10 months rjrw Merged from trunk r1779:1799.
(edit) @1797 [1797] 10 months rjrw Add molecular transfer rates to iso_sequence Multiply rates by abundance …
(edit) @1780 [1780] 10 months rjrw Merged from trunk r1738:1779
(edit) @1770 [1770] 10 months rjrw Correct bugs from last commit (one routine name wasn't changed, …
(edit) @1769 [1769] 10 months rjrw Complete factoring chemical solver detail out of mole_newton_step, rename …
(edit) @1768 [1768] 10 months rjrw Start to factor chemistry out of Newton solver.
(edit) @1742 [1742] 11 months rjrw Convert molecule list and network source/sink vectors to …
(edit) @1741 [1741] 11 months rjrw Further rationalise variable names and content of molecule object.
(edit) @1740 [1740] 11 months rjrw Eliminate last references to COmole/comole; convert one element …
(edit) @1739 [1739] 11 months rjrw Merged from trunk r1700:1738
(edit) @1729 [1729] 11 months rjrw Initial implementation of finite surface saturation of …
(edit) @1717 [1717] 11 months rjrw Code consensus view on the implementation of photodesorption rates.
(edit) @1714 [1714] 12 months rjrw Revise coding of grain photoevaporation rates. Switch back error scaling …
(edit) @1712 [1712] 12 months rjrw Mask out grain surface chemistry (was causing convergence failures, need …
(edit) @1708 [1708] 12 months rjrw Note some implementation oddities in grain surface reactions -- mostly not …
(edit) @1706 [1706] 12 months rjrw Integrate Nick Abel's grain chemistry additions to the network. Solve …
(edit) @1701 [1701] 12 months rjrw Merged from trunk r1608:1700
(edit) @1696 [1696] 12 months rjrw Remove some redundant code, try to ensure conservation in ion_trim -- …
(edit) @1695 [1695] 12 months rjrw Fix fast ASSERT failure in flow10_med_n3bigA_newmole.in, see ticket …
(edit) @1693 [1693] 12 months rjrw Previous fix for limit_supra breaks grains_lte, h2_cr_grains, …
(edit) @1691 [1691] 12 months rjrw Refactor testing of whether the network holds the species density to allow …
(edit) @1690 [1690] 12 months rjrw Remove over-zealous ASSERT on c[i][i] triggered by …
(edit) @1688 [1688] 12 months rjrw Further rationalization of routine names and locations.
(edit) @1687