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Changeset 2336 for trunk/tsuite

Timestamp:

08/17/08 14:32:56 (5 months ago)

Author:

gary

Message:

parse_set.cpp - update comments to include reference for default H2 grain formation pumping distribution

orion_hii_dist_grn.in, orion_hii_single_grn.in remove two fully redundant tests

*.in continue tidy-up of comments

Location:

trunk/tsuite/auto

Files:

: 2 removed
: 76 modified

h2_cr.in (modified) (3 diffs)
h2_hminus.in (modified) (3 diffs)
h2_pdr_leiden_f1.in (modified) (2 diffs)
h2_solomon.in (modified) (1 diff)
h2_t2000.in (modified) (2 diffs)
h2_t500.in (modified) (1 diff)
helike_ar.in (modified) (3 diffs)
helike_c.in (modified) (3 diffs)
helike_co.in (modified) (2 diffs)
helike_cu.in (modified) (2 diffs)
helike_fe.in (modified) (3 diffs)
helike_mg.in (modified) (2 diffs)
helike_n.in (modified) (2 diffs)
helike_ne.in (modified) (3 diffs)
helike_ni.in (modified) (2 diffs)
helike_o.in (modified) (3 diffs)
helike_si.in (modified) (3 diffs)
helike_zn.in (modified) (2 diffs)
hhe_otspp.in (modified) (1 diff)
hhe_otssp.in (modified) (2 diffs)
hhe_outpp.in (modified) (1 diff)
hhe_outppff.in (modified) (1 diff)
hhe_outsp.in (modified) (2 diffs)
hii_blister.in (modified) (2 diffs)
hii_coolstar.in (modified) (3 diffs)
hii_icf.in (modified) (1 diff)
hlike_c.in (modified) (2 diffs)
hlike_o.in (modified) (2 diffs)
h_outopen.in (modified) (2 diffs)
h_outpp.in (modified) (1 diff)
h_t4_conemis.in (modified) (2 diffs)
h_t4_conemis_lon.in (modified) (1 diff)
h_t4_conemis_thick.in (modified) (1 diff)
igm_lalpha.in (modified) (1 diff)
igm_primal.in (modified) (1 diff)
ism.in (modified) (2 diffs)
ism_cosmicray.in (modified) (1 diff)
ism_hot_brems.in (modified) (2 diffs)
ism_jura.in (modified) (1 diff)
limit_casec_h_den5.in (modified) (1 diff)
limit_compton_hi_t.in (modified) (1 diff)
limit_compton_lo_t.in (modified) (1 diff)
limit_compton_mid_t.in (modified) (1 diff)
limit_hi_ion.in (modified) (1 diff)
limit_h_induc.in (modified) (1 diff)
limit_laser_1.in (modified) (2 diffs)
limit_laser_2.in (modified) (2 diffs)
limit_laser_200.in (modified) (1 diff)
limit_laser_200_low.in (modified) (1 diff)
limit_laser_3.in (modified) (2 diffs)
limit_lowd0.in (modified) (2 diffs)
limit_lowdm6.in (modified) (1 diff)
limit_lte_he1_coll.in (modified) (1 diff)
limit_lte_he1_ste.in (modified) (1 diff)
limit_lte_hhe_coll_t50.in (modified) (1 diff)
limit_lte_hhe_induc.in (modified) (1 diff)
limit_lte_hhe_ste.in (modified) (1 diff)
limit_lte_hminus.in (modified) (1 diff)
limit_lte_h_t50_cion.in (modified) (1 diff)
limit_lte_h_t50_coll.in (modified) (1 diff)
limit_lte_metal.in (modified) (1 diff)
limit_strom.in (modified) (1 diff)
limit_supra.in (modified) (1 diff)
limit_vbhum.in (modified) (2 diffs)
limit_veryveryfast.in (modified) (1 diff)
nlr_lex00.in (modified) (1 diff)
nlr_liner.in (modified) (1 diff)
nlr_paris.in (modified) (1 diff)
nova_dqher.in (modified) (2 diffs)
nova_photos.in (modified) (1 diff)
optimize_phymir.in (modified) (1 diff)
optimize_subplex.in (modified) (1 diff)
orion_hii_dist_grn.in (deleted)
orion_hii_open.in (modified) (1 diff)
orion_hii_pdr.in (modified) (2 diffs)
orion_hii_pdr_fast.in (modified) (3 diffs)
orion_hii_pdr_pp.in (modified) (1 diff)
orion_hii_single_grn.in (deleted)

Legend:

: Unmodified
: Added
: Removed

trunk/tsuite/auto/h2_cr.in

r2225	r2336
1		title ~~background cosmic ray ionization by suprathermal electrons only~~
	1	title H2 with background cosmic ray ionization
2	2	c
3	3	c commands controlling continuum =========
4		c this is hot star ~~continuum~~
	4	c this is hot star SED
5	5	black 30000
6	6	intensity -5. range 0.4412 to 1 Ryd
7	7	c this will remove all ionizing radiation
8	8	extinguish 24 0
9		c background CR ionization rate should be 2.5e-17 s^-1,
10		c Tielens & Hollenbach 1985; McKee AstroPH 9901370
	9	c background CR ionization rate of 2.5e-17 s^-1,
11	10	cosmic rays, background
12	11	c
…	…
20	19	c
21	20	c other commands for details =========
22		set h2 grain formation thermal pump
23		failures 5
	21	c failures should not occur
	22	failures 1
24	23	atom h2
25	24	iterate
	25	c want clean test of CR physics so set constant kinetic temperature
26	26	constant temperature 500K
27		c must turn off line photoexcitation
	27	c must turn off line photoexcitation and Solomon process
28	28	c since we want to test cr heating and ionization
29	29	no induced processes
…	…
122	122	// >>chng 06 may 30, NA refactor CO, fix H+CH=>C+H2 rate, from 2.16 to 1.68
123	123	assert H2 column density level v=0 J=5 N=1.68 error 0.1
124
125		//
	124	c
126	125	c h2_cr.in
127	126	c class limit

trunk/tsuite/auto/h2_hminus.in

r1081	r2336
13	13	c
14	14	c commands for density & abundances =========
	15	c no grains in this sim so H2 forms by H- route
15	16	abundances ism no grains
16	17	hden 5
…	…
22	23	c
23	24	c other commands for details =========
	25	c default is Takahashi 2001 - test thermal distribution here
24	26	set h2 grain formation thermal pump
25	27	atom h2
…	…
108	110	c
109	111
110		This tests ~~H2 in limit of H- formation and solomon destruction~~
	112	This tests large H2 model in limit of H- formation and Solomon destruction.
111	113

trunk/tsuite/auto/h2_pdr_leiden_f1.in

r1861	r2336
1		* set atomic data molecules h2 h 1999 cs
2		title low density flux model 1 as defined in e-mail
	1	title low density and flux model 1
3	2	atom H2 He collisions new
4	3	c
…	…
148	147	c
149	148
	149	This is one of the tests in Rollig et al. 2007, A&A, 467, 187

trunk/tsuite/auto/h2_solomon.in

r880	r2336
22	22	c
23	23	c other commands for details =========
	24	c default is Takahashi 2001 - test thermal distribution here
24	25	set h2 grain formation thermal pump
25	26	atom h2

trunk/tsuite/auto/h2_t2000.in

r1864	r2336
9	9	c this will remove all ionizing radiation
10	10	extinguish 24 0
	11	c must provide source of ionization for chemistry
11	12	cosmic rays, background
12	13	c
13	14	c commands for density & abundances =========
14	15	hden 6
15		grains ism, abundance log 0.16 single~~, no qheat~~
	16	grains ism, abundance log 0.16 single
16	17	init file="ism.ini"
17	18	abundances he -1.01 c -3.52 n-8 o-3.30 ne-8 mg-5.89
…	…
78	79	c ========================================
79	80
80		This is a collisionally dominated H2 simulation~~s. t~~he temperature
	81	This is a collisionally dominated H2 simulation. The temperature
81	82	has been fixed at 2000K and the large molecule turned on. The calculation
82	83	checks the returned value of the ortho to para densities.
83		~~cosmic rays and the incident continuum are small,~~ density is high,
84		so populations should be close to LTE.
	84	Cosmic rays and the incident continuum have little effect, the density is high,
	85	so the populations should be close to LTE.
85	86

trunk/tsuite/auto/h2_t500.in

r1864	r2336
141	141	c ========================================
142	142
143		this is a dense molecular gas with no cosmic rays and the incident
144		continuum set to a small value. the lower levels are in LTE and
145		the populations check this.
	143	This is a dense molecular gas with background cosmic rays and the incident
	144	radiation field set to a small value. The lower levels are in LTE.
146	145

trunk/tsuite/auto/helike_ar.in

r484	r2336
1		title ~~test he-like argon~~ ion
	1	title He-like argon emission
2	2	c
3	3	c commands controlling continuum =========
…	…
7	7	c commands for density & abundances =========
8	8	hden 7
	9	c include lots of the element we are testing and set the ionization
	10	c to be dominated by the correct ion stage
9	11	element argon abundance -2
10	12	element argon ionization -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 0 -5
…	…
67	69	c
68	70
69		test whether he-like ion populations and emission for argon
70		agree with published calcs.
	71	test He-like emission for argon
71	72
72	73

trunk/tsuite/auto/helike_c.in

r1875	r2336
1		title ~~test he-like carbon~~ ion
	1	title he-like carbon emission
2	2	c
3	3	c commands controlling continuum =========
…	…
7	7	c commands for density & abundances =========
8	8	hden 7
	9	c include lots of the element we are testing and set the ionization
	10	c to be dominated by the correct ion stage
9	11	element carbon abundance -2
10	12	element carbon ionization -5 -5 -5 -5 -5 0 -5
…	…
79	81	c
80	82
81		test whether he-like ion populations go to lte in high density limit.
82		The level populations should be in LTE, and the departure coefficients
83		should be unity.
	83	test he-like carbon emission
84	84

trunk/tsuite/auto/helike_co.in

r1864	r2336
1		title ~~test he-like cobalt~~ ion
	1	title He-like cobalt emission
2	2	//
3	3	atom he-like levels 10
…	…
36	36	assert line luminosity "Co26" 1.728A -18.395
37	37	//
	38	c
	39	c helike_co.in
	40	c class limit
	41	c ========================================
	42	c
38	43
	44	test emission of He-like Co
	45

trunk/tsuite/auto/helike_cu.in

r1864	r2336
1		title ~~test he-like copper~~ ion
	1	title He-like copper emission
2	2	//
3	3	atom he-like levels 10
…	…
35	35	// >>chng 06 aug 18, from -18.387 to -18.292, RP update trans prob
36	36	assert line luminosity "Cu28" 1.492A -18.292
	37	c
	38	c helike_cu.in
	39	c class limit
	40	c ========================================
	41	c
37	42
38
	43	test emission of He-like Cu

trunk/tsuite/auto/helike_fe.in

r484	r2336
1		title ~~test he-like iron~~ ion
	1	title he-like iron emission
2	2	c
3	3	c commands controlling continuum =========
…	…
8	8	hden 7
9	9	set dr -12
	10	c include lots of the element we are testing and set the ionization
	11	c to be dominated by the correct ion stage
10	12	element iron abundance -2
11	13	element iron ionization -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 0 -5
…	…
67	69	c
68	70
69		test whether he-like ion populations and emission for argon
70		agree with published calcs.
	71	check He-like emission for iron
71	72
72	73

trunk/tsuite/auto/helike_mg.in

r484	r2336
1		title ~~test he-like magnesium~~ ion
	1	title he-like magnesium emission
2	2	c
3	3	c commands controlling continuum =========
…	…
75	75	c
76	76
77		test whether he-like ion populations and emission for magnesium
78		agree with published calcs.
	77	test He-like Mg emission
79	78
80	79

trunk/tsuite/auto/helike_n.in

r1875	r2336
1		title ~~test he-like nitrogen~~ ion
	1	title He-like nitrogen emission
2	2	c
3	3	c commands controlling continuum =========
…	…
74	74	c
75	75
76		test whether he-like ion populations go to lte in high density limit.
77		The level populations should be in LTE, and the departure coefficients
78		should be unity.
	76	test He-like emission for N
79	77

trunk/tsuite/auto/helike_ne.in

r486	r2336
1		title ~~test he-like neon~~ ion
	1	title he-like neon emission
2	2	c
3	3	c commands controlling continuum =========
…	…
7	7	c commands for density & abundances =========
8	8	hden 7
	9	c include lots of the element we are testing and set the ionization
	10	c to be dominated by the correct ion stage
9	11	element neon abundance -2
10	12	element neon ionization -5 -5 -5 -5 -5 -5 -5 -5 -5 0 -5
…	…
67	69	c
68	70
69		test whether he-like ion populations and emission for oxygen
70		agree with published calcs.
	71	test He-like emission for oxygen
71	72
72	73

trunk/tsuite/auto/helike_ni.in

r1864	r2336
1		title ~~test he-like nickel~~ ion
	1	title he-like nickel emission
2	2	//
3	3	atom he-like levels 10
…	…
37	37	assert line luminosity "Ni27" 1.604A -18.343
38	38	//
	39	c
	40	c helike_ni.in
	41	c class limit
	42	c ========================================
	43	c
	44
	45	Test He-like Ni emission.

trunk/tsuite/auto/helike_o.in

r486	r2336
1		title ~~test~~ he-like oxygen ion vs. Bautista & Kallman 2000 Table 1, column 3
	1	title he-like oxygen ion vs. Bautista & Kallman 2000 Table 1, column 3
2	2	c
3	3	c commands controlling continuum =========
…	…
7	7	c commands for density & abundances =========
8	8	hden 7
	9	c include lots of the element we are testing and set the ionization
	10	c to be dominated by the correct ion stage
9	11	element oxygen abundance -2
10	12	element oxygen ionization -5 -5 -5 -5 -5 -5 -5 0 -5
…	…
69	71	c
70	72
71		test whether he-like ion populations and emission for oxygen
72		agree with published calcs.
	73	test He-like emission for oxygen
73	74
74	75

trunk/tsuite/auto/helike_si.in

r484	r2336
1		title ~~test he-like silicon~~ ion
	1	title He-like silicon emission
2	2	c
3	3	c commands controlling continuum =========
…	…
7	7	c commands for density & abundances =========
8	8	hden 7
	9	c include lots of the element we are testing and set the ionization
	10	c to be dominated by the correct ion stage
9	11	element silicon abundance -2
10	12	element silicon ionization -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 0 -5
…	…
72	74	c
73	75
74		test whether he-like ion populations and emission for silicon
75		agree with published calcs.
	76	test He-like emission for silicon
76	77
77	78

trunk/tsuite/auto/helike_zn.in

r1864	r2336
1		title ~~test he-like zinc~~ ion
	1	title He-like zinc emission
2	2	//
3	3	atom he-like levels 10
…	…
35	35	// >>chng 06 aug 18, from -18.332 to -18.239, RP update trans prob
36	36	assert line luminosity "Zn29" 1.391A -18.239
37		//
	37	c
	38	c helike_zn.in
	39	c class limit
	40	c ========================================
	41	c
38	42
	43	test emission for He-like Zn

trunk/tsuite/auto/hhe_otspp.in

r2016	r2336
1		title plane parallel conservation and ~~hydrogenic emission for pure~~ H, He
	1	title plane parallel conservation and H-like emission for H, He
2	2	c
3	3	c commands controlling continuum =========

trunk/tsuite/auto/hhe_otssp.in

r2016	r2336
1		title ~~pherical conservation and hydrogenic emission for hydrogen and helium~~
	1	title spherical conservation and H-like emission for H and He
2	2	c
3	3	c commands controlling continuum =========
…	…
109	109	assert itrzn < 5
110	110	//
111		c hhe~~onlyoutp~~p.in
	111	c hhe_otssp.in
112	112	c class limit
113	113	c ========================================

trunk/tsuite/auto/hhe_outpp.in

r2016	r2336
1		title plane parallel conservation ~~and H, He emission for pure~~ H, He gas
	1	title plane parallel conservation emission for H, He gas
2	2	c
3	3	c commands controlling continuum =========

trunk/tsuite/auto/hhe_outppff.in

r2016	r2336
1		title plane parallel filling factor ~~for~~ pure H, He gas
	1	title plane parallel filling factor pure H, He gas
2	2	c
3	3	c commands controlling continuum =========

trunk/tsuite/auto/hhe_outsp.in

r2016	r2336
1		title spherical conservation and ~~hydrogenic emission for hydrogen and helium~~
	1	title spherical conservation and H-like emission for H, He
2	2	c
3	3	c commands controlling continuum =========
…	…
98	98	assert HHeicf 0.1809 error 0.01
99	99	//
100		//
101	100	assert itrzn < 5
102		c hheonlyoutpp.in
	101	c
	102	c hhe_outsp.in
103	103	c class limit
104	104	c ========================================
105	105	c
	106
106	107
107	108	This tests a spherical cloud with only hydrogen and helium.

trunk/tsuite/auto/hii_blister.in

r2010	r2336
1		title ~~conditions similar to Orion nebula hii_blister~~
	1	title Lexington 1995 dust-free hii blister region
2	2	c
3	3	c commands controlling continuum =========
…	…
12	12	hden 4
13	13	init file="ism.ini"
	14	c HII region abundance but no dust
14	15	abundances hii region no grains
15	16	abundances he1 c1 n1 o1 ne1 mg=.0001 si.01 s1 cl1 ar1

trunk/tsuite/auto/hii_coolstar.in

r2001	r2336
1		title ~~cool HII region model from Lexington Meeting~~
	1	title dust free cool HII region model, Lexington 1995
2	2	c
3	3	c commands controlling continuum =========
…	…
29	29	plot continuum range .1
30	30	print line faint .01
31		print line sum :this is the sum of lines in table 2 of the Lexington meeting
	31	c this is the sum of lines in table 2 of the Lexington meeting
	32	print line sum
32	33	N 2 6584
33	34	N 2 6548
…	…
188	189	c
189	190
	191
190	192	This is one of the test cases from the Lexington Meeting suite of nebulae.
191	193	It is a grain-free HII region ionized by a very cool star. Hydrogen is

trunk/tsuite/auto/hii_icf.in

r564	r2336
50	50	c ========================================
51	51
	52
52	53	This is an example of an H II region irradiated
53	54	by a hard stellar continuum - one of the Mihalas NLTE stars.

trunk/tsuite/auto/hlike_c.in