Changeset 2335 for trunk/tsuite

Timestamp:

08/17/08 07:50:08 (5 months ago)

Author:

gary

Message:

parse_commands.cpp - fix typo in comment, clean up other comments

grid_line_ratios.in - change name to func_grid_line_ratios.in to follow name convention

*.in - improve comments - no change in commands themselves

NB - did not change grains_hot.in - it includes the no qheat option which should be removed. throws an assert if quantum heating is allowed

Location:

trunk/tsuite/auto

Files:

• agn_S_curve_grid.in (modified) (3 diffs)
• aperture_beam_lum.in (modified) (1 diff)
• blr_kk81.in (modified) (1 diff)
• blr_level2.in (modified) (2 diffs)
• coll_coronal.in (modified) (2 diffs)
• coll_heat_only.in (modified) (1 diff)
• coll_t5.in (modified) (1 diff)
• coll_t7.in (modified) (1 diff)
• doc_tsuite.pl (modified) (2 diffs)
• dynamics_orion_flow.in (modified) (1 diff)
• feii_hin.in (modified) (2 diffs)
• feii_hirad.in (modified) (1 diff)
• feii_ste.in (modified) (1 diff)
• func_abund_fluc.in (modified) (2 diffs)
• func_globule.in (modified) (1 diff)
• func_grid_line_ratios.dat (moved) (moved from trunk/tsuite/auto/grid_line_ratios.dat) (1 prop)
• func_grid_line_ratios.in (moved) (moved from trunk/tsuite/auto/grid_line_ratios.in) (1 diff, 1 prop)
• func_hotgas_coolstar.in (modified) (1 diff)
• func_ion_increase.in (modified) (1 diff)
• func_lines.in (modified) (1 diff)
• func_map.in (modified) (1 diff)
• func_set_ion.in (modified) (1 diff)
• func_stopline1.in (modified) (2 diffs)
• func_stopline2.in (modified) (2 diffs)
• func_t3.in (modified) (1 diff)
• func_test.in (modified) (2 diffs)
• func_trans_punch.in (modified) (2 diffs)
• func_trans_read.in (modified) (2 diffs)
• grains_lte.in (modified) (3 diffs)
• grains_temp.in (modified) (1 diff)
• grains_temp_all.in (modified) (1 diff)

trunk/tsuite/auto/agn_S_curve_grid.in

@@ -4 +4 @@
 c this is the generic AGN continuum
 table agn
-c the ionization parameter 
+c the ionization parameter will be varied
 ionization parameter 0.00 vary
 grid from 0 to 3 in 0.25 dex steps
@@ -28 +28 @@
 c line to make line list smaller
 normalize to "totl" 1216
-print line faint 10 
+print line faint 10 will be varied
+c create file with list of grid parameters
 punch grid "agn_S_curve_grid.grd" last
+c save average H+ temperature
 punch average "agn_S_curve_grid.avr" last
 temperature hydrogen 1 
 end of temperatures 
 punch asserts "agn_S_curve_grid.asr"
+c save heating and cooling
 punch heating "agn_S_curve_grid.het" last
 punch cooling "agn_S_curve_grid.col" last
@@ -49 +52 @@
 c
 
-This is part of a series of models that check the temperature
+This computes a series of models that check the temperature
 through the S curve in the Fields et al. three-phase model of
 ISM stability.

trunk/tsuite/auto/aperture_beam_lum.in

@@ -40 +40 @@
 and when the calculation is complete, the program confirms that the "luminosity"
 of the line is the emitting volume times 1e-10.  The aperture command
-is verified by asserting that the emission line has the correct "luminosity".
+is verified by asserting that this emission line has the correct "luminosity".
 
 

trunk/tsuite/auto/blr_kk81.in

@@ -469 +469 @@
 c 
 
-This is the 34standard34 BLR model presented by Kwan and Krolik (1981).
+This is the "standard" BLR model presented by Kwan and Krolik (1981).
 
 >>refer blr     cloud   Kwan, J.,  & Krolik, J. 1981, ApJ, 250, 478
 
-Checks:
+Compare line intensities to previous versions of CLOUDY
+by entering into table on page Error! Bookmark not defined..
 
--       Compare line intensities to previous versions of CLOUDY
-        by entering into table on page Error! Bookmark not defined..
+The code caution that the resulting total pressure was not constant
+is to be expected.  The KK calculation assumed constant gas pressure,
+but internally generature line radiation pressure is significant.  
+Because of this the sum
+of gas plus radiation pressure was not constant although 
+the gas pressure was. 
 
--       A code caution that the resulting total pressure was not constant
-        is to be expected.  The KK calculation assumed constant gas pressure,
-        but radiation pressure was significant.   Because of this the sum
-        of gas plus radiation pressure was not constant (but gas pressure was). 
-

trunk/tsuite/auto/blr_level2.in

@@ -1 @@
-title test dominant blr_level2 lines
+title test dominant level2 lines
 c
 c commands controlling continuum =========
@@ -248 +248 @@
 c ========================================
 
-This model checks predictions for the "blr_level2" lines.  These are
+This model checks predictions for the "level2" lines.  These are
 lines that are normally very weak, have Opacity Project wavelengths,
 and g-bar collision strengths.  Phosphorus is given a large abundance
-so that its blr_level2 lines are significant.
+so that its level2 lines are significant.
 

trunk/tsuite/auto/coll_coronal.in

@@ -4 +4 @@
 c temperature of corona
 coronal equilibrium, 2.5e6 K
-c assume the sun is an Atlas atmosphere at 5700K
-blackbody 5770
+c assume the sun is a blackbody at 5770K
+blackbody 5770 K
 luminosity solar linear 1 
 c
@@ -297 +297 @@
 
 This is a rough model of the solar corona.
-The test checks that the table star atlas and coronal equilibrium commands work.
+The test checks that the coronal equilibrium commands work.
 The gas is predominantly collisionally ionized.
 

trunk/tsuite/auto/coll_heat_only.in

@@ -98 +98 @@
 
 This test is an optically thin collisionally ionized gas with no
-photoionization at all.  Before c9601 the code would not do the ionization
-stage trimming correctly. Original bug caught by Ronnie Hoogerweft.
+photoionization at all. 
 
 

trunk/tsuite/auto/coll_t5.in

@@ -198 +198 @@
 
 This is a test collisional ionization equilibrium
-at 100000 K.
+at 1e5 K.

trunk/tsuite/auto/coll_t7.in

@@ -154 +154 @@
 
 Test with only collisional ionization at a
-high gas high temperature. 
+high temperature. 

trunk/tsuite/auto/doc_tsuite.pl

@@ -149 +149 @@
 close(THTML);
 
-print "Created:$htests\n        $tests\n", ;
+print "The file $tests contains a list of the file names and titles.\n";
+print "The file $htests has the formatted contents of each test case.\n";
 
 
@@ -166 +167 @@
 
 
-

trunk/tsuite/auto/dynamics_orion_flow.in

@@ -132 +132 @@
 c 
 
-This is a model similar in spirit to the blister geometry HII region
+This is a model similar in spirit to the blister geometry H+ region
 model computed by Baldwin et al. (1991), but with a D-critical flow.
 Many physical processes have been disabled to make this simulationn faster.

trunk/tsuite/auto/feii_hin.in

@@ -7 +7 @@
 c commands for density & abundances =========
 hden 18
+c force a high electron density to insure collisions dominate
 eden 18
 c
@@ -32 +33 @@
 This checks that, at high particle densitites, in which
 the gas should be in collisional
-equilibrium, the level populations of the model Fe+ ion
+equilibrium, the level populations of the large model Fe+ ion
 go to the proper values, where the departure coefficients
 are all equal to unity.

trunk/tsuite/auto/feii_hirad.in

@@ -34 +34 @@
 This checks that, at high radiation densitites, in which
 the gas is irradiated by a blackbody in strict thermodynamic
-equilibrium, the level populations of the model Fe+ ion
+equilibrium, the level populations of the large model Fe+ ion
 go to the proper values, where the departure coefficients
 are all equal to unity.

trunk/tsuite/auto/feii_ste.in

@@ -34 +34 @@
 This model has a very high iron abundance, 100x H, and most Fe is
 in the form of Fe+. It is irradiated by a blackbody in strict
-thermodynamic equilibrium.  The mode checks that the temperature
+thermodynamic equilibrium.  We check that the temperature
 of the gas is equal to the radiation temperature, to confirm
 that the thermal properties of the model FeII atom obey thermodynamics.

trunk/tsuite/auto/func_abund_fluc.in

@@ -1 @@
-title this runs the standard, one command, test, which contains many asserts
+title check fluctuating heavy-element abundances 
 c commands controlling continuum =========
 blackbody 5
@@ -33 +33 @@
 c 
 
-This checks that the variable abundances option still works
+This checks that the variable abundances option works
 

trunk/tsuite/auto/func_globule.in

@@ -56 +56 @@
 
 
-This model uses the globule command, and tests that the zoning logic
+This model uses the globule command, tests that the zoning logic
 works for this extreme case, and that the code is able to converge
 the globule model.

trunk/tsuite/auto/func_grid_line_ratios.in

@@ -25 +25 @@
 c
 c commands controlling output =====
-punch line list "grid_line_ratios.pun" "grid_line_ratios.dat" ratio no hash
-punch grid "grid_line_ratios.grd"
+punch line list "func_grid_line_ratios.pun" "func_grid_line_ratios.dat" ratio no hash
+punch grid "func_grid_line_ratios.grd"
 c
 c commands giving (lack of) assert ==========
 assert nothing 0 
 c
-c grid_line_line_ratios.in
+c func_grid_line_line_ratios.in
 c class function
 c ===================================================

trunk/tsuite/auto/func_hotgas_coolstar.in

@@ -114 +114 @@
 c 
 
-This is a test where the continuum source is very soft, 
-and does not extend into energies where the
+This is a test where the CMB is the only continuum source.
+It does not extend to energies where the
 code needs to work.  There are special cases 
 used in this situation, for continuum addressing,

trunk/tsuite/auto/func_ion_increase.in

@@ -231 +231 @@
 c 
 
-this model tests the case where the ionization increases with depth.
-The density is a fast powerlaw to insure this.
-
-
-
+This density falls off faster than 1/r^2 so the ionization increases
+with depth.  Most sims have decreasing rather than increasing ionization.
+
+
+

trunk/tsuite/auto/func_lines.in

@@ -35 +35 @@
 The func_lines lines.dat gives atomic data for all the lines, and their
 critical density at 10000 K.
+The large H2 and Fe II model atoms are turned on to include their lines. 
 

trunk/tsuite/auto/func_map.in

@@ -17 +17 @@
 c
 c commands controlling output    =========
-c change plot to punch to generate plot for hazy
+c save map information to generate plot for hazy
 punch map file="func_map.dta"
 set nmaps 100

trunk/tsuite/auto/func_set_ion.in

@@ -41 +41 @@
 c ========================================
 c 
+ 
 this script exercies the option to specify the ionization of a species

trunk/tsuite/auto/func_stopline1.in

@@ -14 +14 @@
 c commands controlling geometry  =========
 c stop calc at line ratio, the point of this test 
-stop line "c  2" 157.6m reaches 0.0358 
+stop line "C  2" 157.6m reaches 0.0358 
 c
 c other commands for details     =========
@@ -32 +32 @@
 c 
 
-this is an example of a simple calculation that stops when
+This is an example of a simple calculation that stops when
 a line reaches a specified intensity.
 The option to turn off elements with trivial abundances is used.

trunk/tsuite/auto/func_stopline2.in

@@ -12 +12 @@
 c commands controlling geometry  =========
 c stop calc at line ratio, the point of this test 
-stop line "c  2" 157.6m reaches 0.002 relative to "o  3" 5007 
+stop line "C  2" 157.6m reaches 0.002 relative to "o  3" 5007 A
 c
 c other commands for details     =========
@@ -33 +33 @@
 
 this is an example of a simple calculation that stops when
-a certain line ratio is reached
+a certain emission line ratio is reached
+

trunk/tsuite/auto/func_t3.in

@@ -10 +10 @@
 c commands controlling geometry  =========
 stop zone 1
-c specify a thin cell of gas - 1 cm thick
+c specify a thin cell of gas 1 cm thick
 set dr 0 
 c

trunk/tsuite/auto/func_test.in

@@ -1 @@
-title this runs the standard, one command, test, which contains many asserts
+title run smoke test
 c commands controlling continuum =========
 test
@@ -27 +27 @@
 c 
 
-This runs the "test" command, which include several asserts.
+This runs the smoke test command, which include several asserts.
 

trunk/tsuite/auto/func_trans_punch.in

@@ -23 +23 @@
 c
 c commands giving the asserts    =========
-c this contains a large number of asserts 
+c this contains a large number of asserts that both tests use
 init file "trans.dat"
 c 
@@ -35 +35 @@
 continuum then read it.
 
+This sim must come before func_trans_read since it
+generates the punch file needed by func_trans_read.
+Alphabetical order insures this.

trunk/tsuite/auto/func_trans_read.in

@@ -1 +1 @@
 title second of transpunch/transread pair, used transmitted continuum
-c the transmitted continuum produced by func_trans_punch"
+c the transmitted continuum produced by func_trans_punch
 c
 c commands controlling continuum =========
@@ -19 +19 @@
 c
 c commands controlling output    =========
-c this contains a large number of asserts 
+c this contains a large number of asserts used by both commands
 init file "trans.dat"
 print incident continuum 

trunk/tsuite/auto/grains_lte.in

@@ -4 +4 @@
 c commands controlling continuum =========
 black 3 lte
-//
 c
 c commands for density & abundances =========
@@ -10 +9 @@
 eden 5
 init file "hheonly.ini"
-// need to normalize to some line, O will provide some 
+c need to normalize to some line, oxygen will provide some 
 element oxygen on 
+c ism grains with high dust to gas ratio
 grain abund 1
 c
@@ -54 +54 @@
 c 
 
-This test radiations a set of grains with a true blackbody in
+This test irradiates a set of grains with a true blackbody in
 strict thermodynamic equilibrium.  We expect the grains
 (and everything else) to equilibriate at the blackbody temperature.
 The gas temperature is forced to the radiation temperature because
 the current molecule network (based on ISM approximations) does not
-now go to LTE in the high radiation density limit.  The calculation
+go to LTE in the high-radiation density limit.  The calculation
 asserts that all grain temperatures are very close to the radiation
 temperature.

trunk/tsuite/auto/grains_temp.in

@@ -41 +41 @@
 c 
 
-This turns on all the grain species that the code knows about,
-at least in its default state.  A model of an ionized layer is
+This turns on all the grain species that are included in the distribution.
+A model of an ionized layer is
 done and the asserts confirm the resulting grain temperatures.
 

trunk/tsuite/auto/grains_temp_all.in

@@ -74 +74 @@
 c 
 
-this is a relatively quick test of the new grains.  
+This is a relatively quick test of grains.  
 The Orion and ISM silicate and graphitic grains
 are turned on and their equilibrium temperature
-checked.  This uses distributed grain sizes by default.
+checked.